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MicK7 avatar MicK7 commented on June 7, 2024

Here is a simple handy fix

  # Workaround for leftover build directory paths in HDF5 installation
  # https://github.com/HDFGroup/hdf5/issues/2422
  sed -i.tmp 's/-I.*H5FDsubfiling//' \
      "$(which h5cc)" \
      "$(which h5c++)"

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MicK7 avatar MicK7 commented on June 7, 2024

@brtnfld Do you know if hdf5 team is planning to release a fix ?

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brtnfld avatar brtnfld commented on June 7, 2024

It is not fixed. I'll push for a fix for the 1.14.1 release.

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brtnfld avatar brtnfld commented on June 7, 2024

@MicK7, was HDF5 built with CMake or Autotools? Was it a system-provided version of HDF5?

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MicK7 avatar MicK7 commented on June 7, 2024

HDF5 was built with autotools. HDF5 was not a system-provided version but it was part of a conda-forge feedstock so pretty standard. I don't think that spack system is affected since they use cmake but I need to check.

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MicK7 avatar MicK7 commented on June 7, 2024

Solved by : HDFGroup/hdf5#2667

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brtnfld avatar brtnfld commented on June 7, 2024

Should be in the next HDF5 1.14.1 release.

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