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aftermc-hicplots

scripts for plotting processed hic datasets, combining and contrasting them

asmf_pb

Analysis pipeline of adenine methylation single-molecule footprinting (aSMF) experiments with PacBio sequencing.

basic_ont

Scripts for splitting, basecalling, barcoding mapping and qc of Nanopore data

bolaji_rnaseq

RNAseq for TOP1 TOP2 auxin degrons and transcriptional inhibitors (alpha amanitin and flavopiridol) performed by Bolaji Isiaka 20211216

boost-hic

callnanodsmf

Analysing nanopore sequencing of dSMF data

chip_seq_data_geo

Automated ChIP-seq data analysis scripts, requiring only the SRR numbers of the analysis.

customliftoverchainfile

scripts to make custom liftover chain file using two different genome versions

dsmf_data_analysis

dsmfgw

mapping bisulfite seq with bwa-meth

evans2016_pnas_data

Scripts to download and process data from Evans et al. (2016) - chromatin HMM states

hicpro

scripts to run singularity image of hicpro

luthi_etal

Fountains paper

moushumidas_paper

nanodsmf

R package for processing CmG and GCm calls generated by Nanopolish

noise2void

Scripts for performing noise2void denoising of microscopy images

prjna63455

Modencode epigenetics data set.

publicdata

download public genome wide data

rdamidseq

R DamID sequencing developed at Meister Lab by Dominic Ritler

salmoneisa

Exon/Intron Split Analysis (EISA) pipeline for RNA-Seq data using GenomicRanges and Salmon

smc_rnaseq

taiyaki_train

Scripts to train a model for methylated cytosine and adenine written by Harald Witte

tiles