A tool to extract sequence reads based on oligo sequence (like primers) using regular expressions.
python rego.py --output Agalma_elegans.18s TGGTTGATCCTGCCAGT data/Agalma_elegans.18s.64.fastq
Agalma_elegans.18s.64.fastq
- 64 sequence reads from the siphonophore Agalma elegans that contain the 18S sequence TGGTTGATCCTGCCAGT
To run tests:
python rego.py GG null.fastq --test
The first two arguments are ignored when running a test and can be any strings.