• Exploratory and targeted analysis of Electronic Health Records
• Quality control & preprocessing
• Visualization & Exploration
• Clustering & trajectory inference

You can install ehrapy via [pip] from [PyPI]:

$ pip install ehrapy

Please have a look at the Usage documentation and the tutorials.

import ehrapy as ep

Exploratory electronic health record analysis with ehrapy Lukas Heumos, Philipp Ehmele, Tim Treis, Julius Upmeier zu Belzen, Altana Namsaraeva, Nastassya Horlava, Vladimir A. Shitov, Xinyue Zhang, Luke Zappia, Rainer Knoll, Niklas J. Lang, Leon Hetzel, Isaac Virshup, Lisa Sikkema, Eljas Roellin, Fabiola Curion, Roland Eils, Herbert B. Schiller, Anne Hilgendorff, Fabian J. Theis medRxiv 2023.12.11.23299816; doi: https://doi.org/10.1101/2023.12.11.23299816 .