Docker containers + scripts for file conversions.
Converts an serialized Seurat object from RDS to h5ad (anndata), compatible with cellxgene.
The new file will appear in the same location with an .h5ad
suffix.
./seurat_to_h5ad <RDS-FILE>
Converts an serialized Seurat object from RDS to ZARR, compatible with vitessce.
The new files will appear in a new folder in the same location with an .h5ad.zarr
suffix.
./seurat_to_zarr <RDS-FILE>
Converts an serialized an anndata h5ad dataset to ZARR, compatible with vitessce.
The new files will appear in a new folder in the same location with an .zarr
suffix.
./h5ad_to_zarr <H5AD-FILE>