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DEICODE is a tool box for running Robust Aitchison PCA on sparse compositional omics datasets, linking specific features to beta-diversity ordination.

To install the most up to date version of deicode, run the following command

# pip (only supported for Qiime >= 2018.8)
pip install deicode

# conda (only supported for Qiime >= 2019.1)
conda install -c conda-forge deicode 

Note: that deicode is not compatible with python 2, and is compatible with Python 3.4 or later. deicode is currently in alpha. We are actively developing it, and backward-incompatible interface changes may arise.

Note: the official plugin docs and tutorial can be found here.

• Sleep Apnea Biplots

• What is Robust Aitchison RPCA

• The code for OptSpace was translated to python from a MATLAB package maintained by Sewoong Oh (UIUC).
• Transforms and PCoA : Scikit-bio
• Data For Examples : Qiita

• simulations
• case studies