Tools for working with UniProt ID mapping data (http://www.uniprot.org/mapping/).
To download UniProt ID mapping data and generate derived mappings, run
./REBUILD.sh
If succesful, this process generates the files NCBIGENE-idmapping.dat
and NCBIGENE-pr-idmapping.dat
and outputs "DONE" on completion.
Note that this process downloads a 9GB file and may take long to complete.
- Unix shell and standard tools (e.g.
wget
) - Python 2.7
- Data from https://github.com/cambridgeltl/proteinontology
-
mergemap
step fails with errorno .dat files
: this step requires that a copy of https://github.com/cambridgeltl/proteinontology is found in a sibling directory (../proteinontology
) and that the script./REBUILD.sh
has been succesfully run there. This can be done by runningcd .. git clone [email protected]:cambridgeltl/proteinontology.git ./proteinontology/REBUILD.sh cd -
in the root directory of this repository.