Or how to run modern stuff over an old CentOS-6.
A docker image to be used on biocai machines
If you find this image useful here's how you can help:
- Send a pull request with your kickass new features and bug fixes
- Star this repo!
Run docker image:
docker pull cafernandezlo/es_udc_biocai_rbase:3.6.3-1.0.0
List of libraries and software:
- FROM centos:centos6
- System libraries: curl, wget, texinfo-tex, flex, zip, libgcc, glibc-devel, gcc, g++, gcc-c++, zlib, zlib-devel, bzip2, bzip2-devel, xz, xz-devel, pcre, pcre-devel, curl-devel, readline-devel, libxml2-devel, epel-release, gcc-6.3.0, R-3.6.3
- R packages (and dependencies): caret, modelgrid, doMC, dplyr, mlr, party, glmnet, MLmetrics, e1071
> sessionInfo()
R version 3.6.3 (2020-02-29)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: CentOS release 6.10 (Final)
Matrix products: default
BLAS/LAPACK: /usr/lib64/libopenblasp-r0.3.3.so
locale:
[1] C
attached base packages:
[1] stats4 grid parallel stats graphics grDevices utils
[8] datasets methods base
other attached packages:
[1] mlr_2.17.1 ParamHelpers_1.14 party_1.3-4 strucchange_1.5-2
[5] sandwich_2.5-1 zoo_1.8-8 modeltools_0.2-23 mvtnorm_1.1-0
[9] dplyr_0.8.5 doMC_1.3.6 iterators_1.0.12 foreach_1.5.0
[13] modelgrid_1.1.1.0 caret_6.0-86 ggplot2_3.3.0 lattice_0.20-38
loaded via a namespace (and not attached):
[1] tidyselect_1.0.0 coin_1.3-1 purrr_0.3.4
[4] reshape2_1.4.4 splines_3.6.3 colorspace_1.4-1
[7] vctrs_0.2.4 generics_0.0.2 survival_3.1-8
[10] prodlim_2019.11.13 rlang_0.4.6 ModelMetrics_1.2.2.2
[13] pillar_1.4.4 glue_1.4.0 withr_2.2.0
[16] multcomp_1.4-13 matrixStats_0.56.0 lifecycle_0.2.0
[19] plyr_1.8.6 lava_1.6.7 stringr_1.4.0
[22] timeDate_3043.102 munsell_0.5.0 gtable_0.3.0
[25] recipes_0.1.12 codetools_0.2-16 parallelMap_1.5.0
[28] class_7.3-15 TH.data_1.0-10 Rcpp_1.0.4.6
[31] backports_1.1.6 checkmate_2.0.0 scales_1.1.0
[34] ipred_0.9-9 fastmatch_1.1-0 BBmisc_1.11
[37] stringi_1.4.6 tools_3.6.3 magrittr_1.5
[40] tibble_3.0.1 crayon_1.3.4 pkgconfig_2.0.3
[43] MASS_7.3-51.5 ellipsis_0.3.0 libcoin_1.0-5
[46] Matrix_1.2-18 data.table_1.12.8 pROC_1.16.2
[49] lubridate_1.7.8 gower_0.2.1 assertthat_0.2.1
[52] R6_2.4.1 rpart_4.1-15 nnet_7.3-12
[55] nlme_3.1-144 compiler_3.6.3 
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