Comments (2)
Hi there,
I cannot recreate this error. My environment with a recently installation of FRASER handles the test data perfectly.
What verison of FRASER are you running? (take a look at sessionInfo()
in the R session producing the error you posted).
from fraser.
Hello,
It is not the FRASER version. Latest version of FRASER (1.99.0) also crushes with this error. The issue is (as far as I understood) in countRNAData --> extractSplitCountRanges -->
return(rowRanges(splitCounts[passed,])) } else{ return(rowRanges(splitCounts))
rowRanges function from matrixStats version 1.2.0 has a deprecated useNames = NA
option. You need to specify TRUE
or FALSE
.
That is why downgrading matrixStats to 1.1.0 solves the issue (also discussed here satijalab/seurat#7501 (comment)).
Just a small modification to fix compatibility with new versions of matrixStats
from fraser.
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from fraser.