brucemoran Goto Github PK

1359_perry_epic

aracne-ap_viper

barcoder

Labeling, tracking, and organizing samples with 2D barcodes

batch_somatic

NextFlow/Singularity based pipeline to process DNA NGS data

bd2han_validation

bovine_dna_rna

brucemoran.github.io

https://brucemoran.github.io

cancergenesetscorer

R package for scoring gene expression data using cancer genesets

charmon_tcga

https://brucemoran.github.io/charmon_tcga

chipseq

ChIP-seq peak-calling, QC and differential analysis pipeline.

cnormileglaucoma

What the Package Does (Title Case)

cobrien_glaucoma

Analysis of Proteomic and RNAseq data of Glaucoma Cell-lines

configs

Config files used to define parameters specific to compute environments at different Institutions

containers

Bioinformatics containers

dna_and_rna

Analysis of DNA and RNA

dnaseq_references

docker

Dockerfiles for Dockerhub

dyck_et_al

TCGA UCEC RNAseq analysis from Dyck et al.

ebrennan_haosmc

egasubmit

Nextflow for European Genome-phenome Archive Submission

endometrium_normal

exome_hla

Calling HLA from exome data with HLAminer in Singularity

exome_n-of-1

Exome sequencing analysis with NextFlow for germline and multiple somatic samples

ffpesig

Codes and Data for FFPEsig manuscript

filloutcmd

Fill out CMD PDF form and save to CSV

genomederiveddiagnosis

gintools

[Dev] Tools for genomic DNA integration analysis

hlaminer

HLAminer environment containerized for singularity

kglennon_tigit

kraken-nf

Simple Kraken2 Nextflow pipeline