Git Product home page Git Product logo

deepcosi's People

Contributors

brian-hongyan avatar

Stargazers

 avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar

Watchers

 avatar  avatar

Forkers

highdxy

deepcosi's Issues

Chimera error

Hi, when I run python codes/DeepCoSI_prediction.py pro.pdb pro_out, there is a error:

Processing PDB...
Done process.
Detecting cysteines...
3 cysteine(s) detected.
Generating pockets...
ModuleCmd_Load.c(213):ERROR:105: Unable to locate a modulefile for 'chimera'
ModuleCmd_Load.c(213):ERROR:105: Unable to locate a modulefile for 'chimera'
ModuleCmd_Load.c(213):ERROR:105: Unable to locate a modulefile for 'chimera'
Generating pockets done.
Loading previously saved dgl graphs and corresponding data...
Load model ./codes/DeepCoSI_model_v1.pth
number of parameters :  1729471
Traceback (most recent call last):
  File "codes/DeepCoSI_prediction.py", line 190, in <module>
    test_true = np.concatenate(np.array(test_true), 0).flatten()
  File "<__array_function__ internals>", line 6, in concatenate
ValueError: need at least one array to concatenate

I have installed the chimera1.13, The error is still there.
Thanks!

Installation error

Hello!

Working on an M1 mac and I have problems in installing the tool using conda.

Basically, lots of packages are not found.

Like this:

ResolvePackageNotFound: 
  - openssl==1.1.1k=h7f98852_1
  - pysocks==1.7.1=py36h06a4308_0
  - cryptography==3.4.7=py36hd23ed53_0
  - xorg-xextproto==7.3.0=h7f98852_1002
  - cairo==1.16.0=h18b612c_1001
  - libpng==1.6.37=hbc83047_0
  - ........

As anyone had similar issues and found solutions?

Many thanks

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    ๐Ÿ–– Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. ๐Ÿ“Š๐Ÿ“ˆ๐ŸŽ‰

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google โค๏ธ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.