bpollner / flowdex Goto Github PK

Instead of having to write flowWorkspace::plot(object) it would be nice to just call plot(object).
(With object being an object of class 'GatingSet_fd'.)

When plotting gates using plotgates(), the following message is displayed:
"Coordinate system already present. Adding new coordinate system, which will replace the existing one."
This is caused by adding
ggcyto::ggcyto_par_set(limits="instrument")
to the plot object.
A possible solution to avoid this (harmless) message might be to extract the machine limits manually from a flow frame, then create the plot object with these limits already.
As time is a factor at the moment, I will leave this as it is for now.

Like in the plotgates function, it would be nice to have the possibility to add a custom filename suffix to the name when exporting (also automatically) the fdmat-object and the file containing the raw data.
Because so far, these names are always the same when using flowdexit, and the user has to manually change / modify the name so that previous files do not get overwritten.