(1) hail로 1KG 100개 vcf 합치는 작업: hail/bpark
(2) sqream python 연결: sqream/bpark

문서작성: https://docs.google.com/document/d/1dxSrIM52xJ5PlqMigxYxRSNkl1ufW0I1-BFfjq4M9nE/edit?usp=sharing

hail 2024년 논문 [https://www.biorxiv.org/content/10.1101/2024.01.09.574205v1]

vcf file에 대한 문서 [https://samtools.github.io/hts-specs/VCFv4.2.pdf]

python vcf 라이브러리
[https://vcfpy.readthedocs.io/en/stable/]
[https://scikit-allel.readthedocs.io/en/stable/index.html] 개발 중단 -> sgkit
[https://github.com/sgkit-dev/sgkit]

scalable gVCF merging and joint variant calling for population sequencing projects [https://github.com/dnanexus-rnd/GLnexus]

레드헷에 bpark 계정
mkdir -p ~/miniconda3
wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O ~/miniconda3/miniconda.sh
bash ~/miniconda3/miniconda.sh -b -u -p ~/miniconda3
rm -rf ~/miniconda3/miniconda.sh
conda -n hail python=3.9
conda activate hail