Comments (3)
The exception is still available in imctools/io/errors.py
file, but it isn't used internally anymore because reading corrupted acquisitions should return None and not raise an exception. This is due to the fact that one MCD file can have both valid and invalid acquisitions and parsing such files shouldn't stop the execution.
from imctools.
I see, so Mcdparser.get_acquisition_data
will always return a AcquisitionData
but it's image_data
being None
and the is_valid
flag will reflect some error occurred.
I know it's a lot of effort and documentation is hard, but having return types annotated and raised exceptions documentation would be really great.
You guys fine with PRs?
from imctools.
Sure, you are welcome.
from imctools.
Related Issues (20)
- extract panorama HOT 4
- Extra 161 bytes extracted on all image buffers HOT 1
- TxtParser and McdParser should share a common base class
- Wrong ROI coordinates for new Fluidigm software versions HOT 4
- Create imctools.data.Acquisition object without loading image data when using TxtParser
- Feature request: option to export additional columns in omefile_2_analysisfolder HOT 4
- KeyError: 'Name' HOT 11
- ValueError: invalid literal for int() with base 10: HOT 1
- Broken assertion HOT 3
- ome2histocat stripps .tiff file ending from masks HOT 2
- Value Error: No session JSON files available HOT 3
- Error while running IMCtools HOT 4
- Generated OME-XML in OME-TIFF files is not schema compliant due to out-of-order AcquisitionDate element HOT 3
- broken link to xml namespace HOT 1
- imctools.scripts HOT 2
- Typo in method omexml.py HOT 2
- Inquiry about omexml.py related to schema location HOT 2
- NotADirectoryError: [Errno 20] Not a directory: '../../data/ometiff/.DS_Store/.DS_Store_Acquisition_meta.csv' HOT 4
- Adding clear specification of the 'ome' folder HOT 1
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