Name: André F. Rendeiro
Type: User
Company: CeMM - Research Center for Molecular Medicine
Bio: Principal Investigator at CeMM - Research Center for Molecular Medicine, Vienna Austria;
Leading @rendeirolab;
he/him
Twitter: afrendeiro
Location: Vienna, Austria
Blog: https://andre-rendeiro.com
André F. Rendeiro's Projects
Personal website
Annotated data.
Creates functional annotation of complete genome based on features on GFF file.
astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
Biological Graphic tool in Python
Easily compute clip embeddings and build a clip retrieval system with them
python / numpy / pandas / patsy version of ComBat for removing batch effects - pip installable
My cv
Map-reduce style submission of jobs to a Slurm cluster.
An electronic lab notebook written in Python's powerful framework Django
My work environment: dockerfiles, dotfiles, ipython configs and ways to get static files
A collection of python functions for genomic data
Make your git commits into your lab notebook
A very simple github post-receive web hook handler.
A Github webhook that runs bioinformatics pipelines upon a push event
R package for gene set enrichment analysis
Which schedulers do public facing HPC systems use?
The role of E2F regulation and H3K79 methylation in Oikopleura dioica's cell cycle modes
A Jax-based library for designing and training transformer models from scratch.
nimblegen_parser
Hidden Markov Model-based nucleossome positioning prediction
Nucleossome prediction in silico and data exploration
Parametric Analysis of Gene Set Enrichment (PAGE) - Python implementation