Comments (2)
Hi @afrendeiro,
Thanks for asking. While I am still working on a manuscript, you can cite the repository as:
@misc{ImcSegmentationPipeline,
author = {Vito RT Zanotelli, Bernd Bodenmiller},
title = {{ImcSegmentationPipeline: A pixelclassification based multiplexed image segmentation pipeline}},
month = Sept,
year = 2017,
doi = {10.5281/zenodo.3841961},
version = {0.9},
publisher = {Zenodo},
url = {https://doi.org/10.5281/zenodo.3841961}
}
Cheers!
Vito
from imcsegmentationpipeline.
Thanks Vito!
from imcsegmentationpipeline.
Related Issues (20)
- imwrite() got an unexpected keyword argument 'compress' HOT 9
- Errors setting up with example data HOT 3
- zsh:1: parse error near `-m' HOT 1
- Problems with script in Anaconda Navigator (jupyer) HOT 15
- No module named 'imcsegpipe' error HOT 9
- Error in open 1_prepare_ilastik.cppipe HOT 8
- Error imcsegpipe.extract_mcd_file can not read panorama HOT 2
- Question on the identifySecondaryObject in the CellProfiler Pipeline (general question ) HOT 4
- How to perform the analysis without histocat? HOT 2
- No session JSON files available HOT 2
- First steps in Jupyter for MCD pre-processing? HOT 2
- p values for neighborhood analysis HOT 3
- Channel order in pre-trained ilastik classifier HOT 3
- write() got an unexpected keyword argument 'compress' HOT 4
- Unexpected argument 'compress' HOT 2
- Corrupt MCD HOT 8
- '{sys.executable}' is not recognized; imcsegpipe not found HOT 8
- BadZipFile error HOT 2
- SummarizeStack module cannot be loaded properly HOT 3
- Select ROIs for analysis HOT 2
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