• Option 1 (CLI): Just pass python -m prey_predator_model This will generate an pickled file at data/simulations/ using the default single run system parameters & initial state.
  • To perform a multiple run, pass python -m prey_predator_model -e
• Option 2 (cadCAD-tools easy run method): Import the objects at prey_predator_model/__init__.py and use them as arguments to the cadCAD_tools.execution.easy_run method. Refer to prey_predator_model/__main__.py to an example.

.
├── LICENSE
├── README.md
├── SPEC.md
├── prey_predator_model: the `cadCAD` model as encapsulated by a Python Module
│   ├── __init__.py
│   ├── __main__.py
│   ├── experiment.py: Code for running experiments
│   ├── logic.py: All logic for substeps
│   ├── params.py: System parameters
│   ├── structure.py: The PSUB structure
│   └── types.py: Types used in model
├── notebooks: Notebooks for aiding in development
├── requirements-dev.txt: Dev requirements
├── requirements.txt: Production requirements

It's a good package managing practice to create an easy to use virtual environment to install cadCAD. You can use the built in venv package.

Create a virtual environment:

$ python3 -m venv ~/cadcad

Activate an existing virtual environment:

$ source ~/cadcad/bin/activate
(cadcad) $

Deactivate virtual environment:

(cadcad) $ deactivate
$

Requires >= Python 3.6

Install Using pip

$ pip3 install cadcad==0.4.28

Install all packages with requirement.txt

$ pip3 install -r requirements.txt