Run_sspace-longread is an optimized edition of SSPACE-LongRead. We use the software mecat and minimap2 to align the raw Pacbio reads to the assembled contigs or scaffold insteading of blasr. Both of them have a higher efficiency than the software blasr, which is nearly 10 times faster.
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Run_sspace-longread: an optimized version of SSPACE-LongRead