Just to test some basic functions from packages huge, flare, JGL and fastclime
install.packages(c("flare", "JGL", "huge", "fastclime"))
If you go through all the code in "methods.R" you will see the basic usage of every algorithm for all these packages.
In a seperate file "TCGA_network.R" the methods from flare and huge are used on gen data from a database. Espescially the select/criterion function is displayed.