• Tim Sackton (tsackton at g.harvard.edu)
• Scott Edwards (sedwards at fas.harvard.edu)

Scripts and other material for the assembly and analysis of ratite genomes.

Disclaimer: Although we welcome re-use of these materials, except where noted the code we are sharing here is specific to this project and to the Harvard compute cluster. Filenames and paths are often hard-coded in scripts, and software versions/dependencies are often managed via calls to the Harvard Odyssey cluster Lmod system.

Each directory contains the scripts for a particular analysis, along with a README describing that analysis. In many cases logs and/or output files are also stored in a subdirectory under each analysis. Numbers refer to the sections of the methods in the accompanying manuscript.