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goenrich

GO enrichment with python -- pandas meets networkx

gseapy

Gene Set Enrichment Analysis in Python

guides

A new workflow for the custom design of CRISPR libraries.

hackermath

Introduction to Statistics and Basics of Mathematics for Data Science - The Hacker's Way

he_johnston_nbt_2014

Analysis code for our ChIP-nexus Nature Biotechnology manuscript

hic-bench

A set of pipelines for Hi-C and ChIP-Seq analysis.

hic-bench_documentation

User manuals for the HiC-Bench software

hinshaw2015

Scripts used in the Hinshaw 2015 elife paper

hmm_cirrna

procura por circulares

ideep

iDeep: integrated prediction of RNA-protein binding sites using deep learning

in-depth-ngs-data-analysis-course

Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.

introngs_perth2016

Introduction to NGS Data Analysis Perth July 2016

ipminer

Predicting ncRNA-protein interaction using high-level features based on deep learning

ipython-notebooks

A collection of IPython notebooks covering various topics.

itmat_circularrna

jour491-data-visualization

Course materials for a data visualization course taught at the University of Nebraska-Lincoln's College of Journalism and Mass Communications

lace

Building SuperTranscripts: A linear representation of transcriptome data

learndatascience

Open Content for self-directed learning in data science

learning_python

Note for Learning Python 5e

leetcode

:pencil: Python / C++ 11 Solutions of All 418 LeetCode Questions

leetcodeanimation

Demonstrate all the questions on LeetCode in the form of animation.（用动画的形式呈现解LeetCode题目的思路）

lincp21

Analysis scripts to accompany the paper "In vivo characterization of Linc-p21 reveals functional cis-regulatory DNA elements"

lncnet

code for analyzing lncRNA

lncrna-project

de novo LncRNA prediction

lncrna-screen

lncRNA-screen

lncrna_finder

The open source code of pipeline for the identification of long non-coding RNAs

long-rna-seq-pipeline

STAR based ENCODE Long RNA-Seq processing pipeline

material

Course materials for STA426, Herbstsemester 2015

matplotlib-genomics

Some useful scripts for statistical plotting based on matplotlib

matplotlib-tutorial

Matplotlib tutorial for beginner