bioinfolover Goto Github PK

ballgown

Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.

bds-files

Supplementary files for my book, "Bioinformatics Data Skills"

bioawk

BWK awk modified for biological data

cdna_primer

Scripts for processing PacBio transcriptome (Iso-Seq) data

gitskills

hello-bioinfo

learn bioifomatics by it

hisat2

Graph-based alignment (Hierarchical Graph FM index)

magrittr

R package to bring forward-piping features ala F#'s |> operator. Ceci n'est pas un pipe.

mutanthunter

A pipeline to combine RenSeq with EMS mutant screens to identify NLR-type resistance genes

mutchromseq

ngs-pipeline

By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline

nlr-parser

Annotation Pipeline for NLR genes

pysam

Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.

samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

trinityrnaseq

Trinity RNA-Seq de novo transcriptome assembly