Error in py_call_impl(callable, dots$args, dots$keywords) about mofa HOT 6 CLOSED

emp-235-92:~ carlbru$ pip install mofapy
Requirement already satisfied: mofapy in ./Library/Python/2.7/lib/python/site-packages (1.0)
Requirement already satisfied: pandas in ./Library/Python/2.7/lib/python/site-packages (from mofapy) (0.23.4)
Requirement already satisfied: scipy in ./Library/Python/2.7/lib/python/site-packages (from mofapy) (1.2.0)
Requirement already satisfied: numpy in ./Library/Python/2.7/lib/python/site-packages (from mofapy) (1.16.0)
Requirement already satisfied: sklearn in ./Library/Python/2.7/lib/python/site-packages (from mofapy) (0.0)
Requirement already satisfied: argparse in ./Library/Python/2.7/lib/python/site-packages (from mofapy) (1.4.0)
Requirement already satisfied: h5py in ./Library/Python/2.7/lib/python/site-packages (from mofapy) (2.9.0)
Requirement already satisfied: pytz>=2011k in /System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python (from pandas->mofapy) (2013.7)
Requirement already satisfied: python-dateutil>=2.5.0 in ./Library/Python/2.7/lib/python/site-packages (from pandas->mofapy) (2.7.5)
Requirement already satisfied: scikit-learn in ./Library/Python/2.7/lib/python/site-packages (from sklearn->mofapy) (0.20.2)
Requirement already satisfied: six in ./Library/Python/2.7/lib/python/site-packages (from h5py->mofapy) (1.12.0)

> devtools::install_github("bioFAM/MOFA", subdir="MOFAtools")
Downloading GitHub repo bioFAM/MOFA@master
Skipping 15 packages ahead of CRAN: Biobase, BiocGenerics, BiocParallel, DelayedArray, GenomeInfoDb, GenomeInfoDbData, GenomicRanges, IRanges, MultiAssayExperiment, rhdf5, Rhdf5lib, S4Vectors, SummarizedExperiment, XVector, zlibbioc
✔  checking for file ‘/private/var/folders/2r/zlfvsylj481_1f153mph_644b3ydvg/T/RtmpZ6a7f3/remotes5943dbf218d/bioFAM-MOFA-b310386/MOFAtools/DESCRIPTION’ ...
─  preparing ‘MOFAtools’:
✔  checking DESCRIPTION meta-information ...
─  checking for LF line-endings in source and make files and shell scripts
─  checking for empty or unneeded directories
─  looking to see if a ‘data/datalist’ file should be added
─  building ‘MOFAtools_0.99.0.tar.gz’ (1.5s)
   Warning: invalid uid value replaced by that for user 'nobody'
   Warning: invalid gid value replaced by that for user 'nobody'
   
* installing *source* package ‘MOFAtools’ ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (MOFAtools)

> MOFAobject <- runMOFA(MOFAobject)
[1] "No output file provided, using a temporary file..."

    ###########################################################
    ###                 __  __  ___  _____ _                ### 
    ###                |  \/  |/ _ \|  ___/ \               ### 
    ###                | |\/| | | | | |_ / _ \              ### 
    ###                | |  | | |_| |  _/ ___ \             ### 
    ###                |_|  |_|\___/|_|/_/   \_\            ### 
    ###                                                     ###
    ########################################################### 
   
 
    
Loaded view 0 with 200 samples and 310 features...
Loaded view 1 with 200 samples and 4248 features...
Loaded view 2 with 200 samples and 5000 features...
Loaded view 3 with 200 samples and 69 features...

##############################################
## Doing sanity checks and parsing the data ##
##############################################

Error in py_call_impl(callable, dots$args, dots$keywords) : 
  AttributeError: 'list' object has no attribute 'copy' 
4.
stop(structure(list(message = "AttributeError: 'list' object has no attribute 'copy'", 
    call = py_call_impl(callable, dots$args, dots$keywords), 
    cppstack = structure(list(file = "", line = -1L, stack = c("1   reticulate.so                       0x0000000121bb9f9b _ZN4Rcpp9exceptionC2EPKcb + 219", 
    "2   reticulate.so                       0x0000000121bc0a35 _ZN4Rcpp4stopERKNSt3__112basic_stringIcNS0_11char_traitsIcEENS0_9allocatorIcEEEE + 53",  ... 
3.
set_data at entry_point.py#90
2.
mofa_entrypoint$set_data(data = unname(lapply(object@TrainData, 
    function(x) r_to_py(t(x))))) 
1.

carlbru$ pip install git+git://github.com/bioFAM/MOFA --upgrade --user
Collecting git+git://github.com/bioFAM/MOFA
  Cloning git://github.com/bioFAM/MOFA to /private/var/folders/2r/zlfvsylj481_1f153mph_644b3ydvg/T/pip-req-build-6KatHF
Requirement already satisfied, skipping upgrade: pandas in ./Library/Python/2.7/lib/python/site-packages (from mofapy==1.1) (0.23.4)
Requirement already satisfied, skipping upgrade: scipy in ./Library/Python/2.7/lib/python/site-packages (from mofapy==1.1) (1.2.0)
Requirement already satisfied, skipping upgrade: numpy in ./Library/Python/2.7/lib/python/site-packages (from mofapy==1.1) (1.16.0)
Requirement already satisfied, skipping upgrade: sklearn in ./Library/Python/2.7/lib/python/site-packages (from mofapy==1.1) (0.0)
Requirement already satisfied, skipping upgrade: argparse in ./Library/Python/2.7/lib/python/site-packages (from mofapy==1.1) (1.4.0)
Requirement already satisfied, skipping upgrade: h5py in ./Library/Python/2.7/lib/python/site-packages (from mofapy==1.1) (2.9.0)
Requirement already satisfied, skipping upgrade: pytz>=2011k in /System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python (from pandas->mofapy==1.1) (2013.7)
Requirement already satisfied, skipping upgrade: python-dateutil>=2.5.0 in ./Library/Python/2.7/lib/python/site-packages (from pandas->mofapy==1.1) (2.7.5)
Requirement already satisfied, skipping upgrade: scikit-learn in ./Library/Python/2.7/lib/python/site-packages (from sklearn->mofapy==1.1) (0.20.2)
Requirement already satisfied, skipping upgrade: six in ./Library/Python/2.7/lib/python/site-packages (from h5py->mofapy==1.1) (1.12.0)
Installing collected packages: mofapy
  Found existing installation: mofapy 1.0
    Uninstalling mofapy-1.0:
      Successfully uninstalled mofapy-1.0
  Running setup.py install for mofapy ... done
Successfully installed mofapy-1.1

...
Iteration 1227: time=0.40 ELBO=-3129248.31, deltaELBO=0.0996, Factors=10
Converged!



###########################################
## Training finished, processing results ##
###########################################