Comments (6)
I think the problem is that the MOFA python package is not properly installed. Can you open your python interpreter and check if you can import the mofa package?
If this works, can you restart R and try to load the package (from R) via reticulate (https://rstudio.github.io/reticulate/)?
from mofa.
I am able to import the "mofa" package both from the python interpreter and from R.
from mofa.
Then I see no reason why it should not work.. Do other packages like numpy/scipy work from R reticulate? Can you perhaps try with Python 3?
from mofa.
It's working on the UNIX system (RHEL) with python 2.7.5 and R 3.5. Earlier, I installed it on my MacBook having macOS Sierra. Is this package platform dependent? Have you guys tested it on Mac?
And thank you for your help and quick replies!!
from mofa.
We tested it on the three common platforms and works fine. As long as the connection between R and python via reticulate is working, MOFA should run. I noticed that under some conditions one needs to restart R after installing the mofa
python package. Let me know how it goes
from mofa.
I updated the OS and its working now. Thanks for all the help!!
from mofa.
Related Issues (20)
- Improving memory efficiency for CITE-seq data analysis HOT 5
- AttributeError: module 'mofapy' has no attribute 'core.entry_point' HOT 4
- Documentation missmatch for getDefaultModelOptions()$numFactors HOT 1
- plotDataHeatmap() error with correlation but not with euclidean distance HOT 2
- MOFA2: IndexError: list index out of range HOT 1
- Question on initialization HOT 2
- Issue with runMOFA(object) HOT 1
- Error in py_call_impl(callable, dots$args, dots$keywords) : AttributeError: 'NoneType' object has no attribute 'getExpectations' HOT 1
- Failure to Capture Common Sources of Variance in Data HOT 1
- error message: mofapy package not found. HOT 2
- AssertionError: dimensionality mismatch HOT 1
- Different data processing on metabolomics, I get different R2. HOT 7
- Thanks. another problem on running MOFA
- Problem to use mofaOBJECT HOT 2
- Problem to use plotVarianceExplained object in ggplot2
- Error in py_call_impl(callable, dots$args, dots$keywords) : UnicodeEncodeError: 'ascii' codec can't encode character '\u03b5' in position 5: ordinal not in range(128)
- predict function should use S3 dispatching
- 'MOFAtools'
- Archive this repo
- Vignette html flies not accessible
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