I would like to access a specific iRODS collection and download the data for further usage.
However, all my attempts have failed so far and I am not sure what the reason for the errors could be.
(I am also not so experienced with iRODS, so probably some mistakes are also on my side...)
[kuechleo_c@hpc-transfer-1 2023-10-10]$ ils -l /sodarZone/projects/3d/3da44802-6151-4bc5-9f32-fa24d53896ad/sample_data/study_e1e52282-56e7-4b2d-ab4c-eb49da855c3a/assay_61dbfeb0-fa5f-49f6-a1cf-d35866b4d380/
/sodarZone/projects/3d/3da44802-6151-4bc5-9f32-fa24d53896ad/sample_data/study_e1e52282-56e7-4b2d-ab4c-eb49da855c3a/assay_61dbfeb0-fa5f-49f6-a1cf-d35866b4d380:
[kuechleo_c@hpc-transfer-1 2023-10-10]$ icd /sodarZone/projects/3d/3da44802-6151-4bc5-9f32-fa24d53896ad/sample_data/study_e1e52282-56e7-4b2d-ab4c-eb49da855c3a/assay_61dbfeb0-fa5f-49f6-a1cf-d35866b4d380/
[kuechleo_c@hpc-transfer-1 2023-10-10]$ ipwd
/sodarZone/home/kuechleo@CHARITE
[kuechleo_c@hpc-transfer-1 2023-10-10]$ ibun -fc test.tar /sodarZone/projects/3d/3da44802-6151-4bc5-9f32-fa24d53896ad/sample_data/study_e1e52282-56e7-4b2d-ab4c-eb49da855c3a/assay_61dbfeb0-fa5f-49f6-a1cf-d35866b4d380/
remote addresses: 172.16.96.169 ERROR: bunUtil: opr error for /sodarZone/projects/3d/3da44802-6151-4bc5-9f32-fa24d53896ad/sample_data/study_e1e52282-56e7-4b2d-ab4c-eb49da855c3a/assay_61dbfeb0-fa5f-49f6-a1cf-d35866b4d380,
status = -520002 status = -520002 UNIX_FILE_MKDIR_ERR, No such file or directory
[kuechleo_c@hpc-transfer-1 scratch]$ iget -Kr /sodarZone/projects/4c/4c6bee14-f5d3-4734-aba4-a7cfc13276c4/sample_data/study_2a9d8ca5-b4c5-465d-a9ec-25244d0c8889/assay_51f85bf7-dca5-4bad-889e-70e972f8fba8/
/usr/bin/iget: Zeile 3: 4055561 Killed apptainer run /opt/irods/singularity-images/irods-icommands-4.2.11.sif iget $@