This container can be installed as BIBBOX APP or standalone.

After the installation follow these instructions

• approx. time with medium fast internet connection: 15 minutes
• initial user/password: admin / <set during instalations>

Within BIBBOX you can use the BIBBOX to install a lot of software tools. After the installation is finished you can start your application in the dashboard.

• ADMIN_PASSWORD = admin user password

The default values for the standalone installation are:

• ADMIN_PASSWORD = admin

Finally, set up FDP: instructions

• molgenis/molgenis-frontend:8.7.2, offical molgenis-frontend container
• molgenis/molgenis-app:8.7.2, offical molgenis-app container
• postgres:11-alpine, offical postgres container
• molgenis/molgenis-elasticsearch:1.0.0, offical molgenis/molgenis-elasticsearch container
• molgenis/opencpu:opencpu-release-2019-03-20_12-07-11, offical molgenis/opencpu container
• minio/minio:RELEASE.2019-03-20T22-38-47Z, offical minio/minio container

To install the app locally execute the commands:

• Clone the git repository:
  • git clone https://github.com/bibbox/app-molgenis.git
• Change the current directory to app-molgenis:
  • cd app-molgenis/
• Create the directories data/home/molgenis, data/var/lib/postgresql/data, data/usr/share/elasticsearch/data and data/minio/data:
  • mkdir -p data/home/molgenis
  • mkdir -p data/usr/share/elasticsearch/data
  • mkdir -p data/var/lib/postgresql/data
  • mkdir -p data/minio/data
• Copy the file backend.conf to ./data/backend.conf:
  • cp backend.conf data/backend.conf
• Change the permission of the directory ./data:
  • chmod -R 777 data
• Create the docker network bibbox-default-network:
  • docker network create bibbox-default-network
• Run docker-compose up in the root folder of the project:
  • docker-compose up -d
• Alternatively on a Linux system run the bash script intsall.sh after cloning and change the working directory to the git repository directory.
• Set up Fair Data Point: instructions

After the installation (might take a few minutes) open http://localhost in your browser to access Molgenis. The default admin login is user:admin/pw:admin, this can be changed in docker-compose.yml.

• ./data/backend.conf
• ./data/home/molgenis
• ./data/var/lib/postgresql/data
• ./data/usr/share/elasticsearch/data
• ./data/minio/data