beltrame / mmmri Goto Github PK

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upload the script that finished the #26

we need a video for the team to see how everthing comes together so that they can use parts of the code in the future and build on what they learned at the hackathon

Depends on being able to import and export nifti #23

http://d3js.org/

http://nvd3.org/

this will execute the entire process

• Non uniforimity correlation
• scaling
• applying the mask
• running the PCA #30
• running the machine learning #31

we need a 10 minute presentation at the end

• list/intro team members
• "the why" in pitch format
• there was a need for x -> if we have x we can do y -> so we made z
• demo of user interface
• 1min mini-demos of cool aspects of the code
• python processing @beltrame
• machine learning @imanehaf
• brain browser @tsherif
• discussion of what we got done during hackathon vs "future work" (can use the github milestones for this)

@beltrame @emzcoffey @steffejr @Sciencelaer @wang030 got to settings
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(see screenshot)

this will generate a file which will feed #29

mayeb try papaya's utils which can import nifti

https://github.com/rii-mango/Papaya.git

Sigh... Should have thought about this.

Might need help from other teammates.

this will generate an output file (preferably in json) which will be returned to the user

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Create a script that converts nii format to freesurfer format

a standard brain...

The following VR sample has an interface that would work well for the MRI models:

http://vr.chromeexperiments.com/shinysound.html

Different modalities have different orders, I need to make it the same