Comments (2)
akbertram
commented on August 16, 2024
The Renjin-versions of packages are produced by compiling C or C++ code to JVM bytecode, and it looks like there is a problem with our compiler here. It seems to compile a certain operation to a call to Integer.remainderUnsigned():
However, this Java method throws a ArithmeticException on divide by zero, while obviously the corresponding machine instruction emitted by GCC does not. This can be fixed by providing our own static method which does the check for a zero divisor, but I suspect something else is going wrong which leads to a zero divisor.
Unfortunately, debugging compiled C++ code is quite difficult, as it turns out.
You can see the method in dplyr that triggers the exception here:
https://github.com/tidyverse/dplyr/blob/v0.8.2/src/hybrid.cpp#L60
You can demangle the stacktrace using c++filt, which gives the following stacktrace:
boost::unordered::detail::prime_policy<unsigned int>::to_bucket(unsigned int, unsigned int)
boost::unordered::detail::table<boost::unordered::detail::map<std::allocator<std::pair<SEXPREC* const, dplyr::hybrid::hybrid_function> >, SEXPREC*, dplyr::hybrid::hybrid_function, boost::hash<SEXPREC*>, std::equal_to<SEXPREC*> > >::hash_to_bucket(unsigned int) const
boost::unordered::detail::ptr_node<std::pair<SEXPREC* const, dplyr::hybrid::hybrid_function> >* boost::unordered::detail::table<boost::unordered::detail::map<std::allocator<std::pair<SEXPREC* const, dplyr::hybrid::hybrid_function> >, SEXPREC*, dplyr::hybrid::hybrid_function, boost::hash<SEXPREC*>, std::equal_to<SEXPREC*> > >::find_node_impl<SEXPREC*, std::equal_to<SEXPREC*> >(unsigned int, SEXPREC* const&, std::equal_to<SEXPREC*> const&) const
boost::unordered::detail::table<boost::unordered::detail::map<std::allocator<std::pair<SEXPREC* const, dplyr::hybrid::hybrid_function> >, SEXPREC*, dplyr::hybrid::hybrid_function, boost::hash<SEXPREC*>, std::equal_to<SEXPREC*> > >::find_node(unsigned int, SEXPREC* const&) const
std::pair<boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<SEXPREC* const, dplyr::hybrid::hybrid_function> > >, bool> boost::unordered::detail::table<boost::unordered::detail::map<std::allocator<std::pair<SEXPREC* const, dplyr::hybrid::hybrid_function> >, SEXPREC*, dplyr::hybrid::hybrid_function, boost::hash<SEXPREC*>, std::equal_to<SEXPREC*> > >::emplace_unique<boost::unordered::detail::emplace_args1<std::pair<SEXPREC* const, dplyr::hybrid::hybrid_function> > >(SEXPREC* const&, boost::unordered::detail::emplace_args1<std::pair<SEXPREC* const, dplyr::hybrid::hybrid_function> > const&)
std::pair<boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<SEXPREC* const, dplyr::hybrid::hybrid_function> > >, bool> boost::unordered::detail::table<boost::unordered::detail::map<std::allocator<std::pair<SEXPREC* const, dplyr::hybrid::hybrid_function> >, SEXPREC*, dplyr::hybrid::hybrid_function, boost::hash<SEXPREC*>, std::equal_to<SEXPREC*> > >::emplace_unique<boost::unordered::detail::emplace_args1<std::pair<SEXPREC* const, dplyr::hybrid::hybrid_function> > >(SEXPREC* const&, boost::unordered::detail::emplace_args1<std::pair<SEXPREC* const, dplyr::hybrid::hybrid_function> > const&)
std::pair<boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<SEXPREC* const, dplyr::hybrid::hybrid_function> > >, bool> boost::unordered::unordered_map<SEXPREC*, dplyr::hybrid::hybrid_function, boost::hash<SEXPREC*>, std::equal_to<SEXPREC*>, std::allocator<std::pair<SEXPREC* const, dplyr::hybrid::hybrid_function> > >::emplace<std::pair<SEXPREC* const, dplyr::hybrid::hybrid_function> >(std::pair<SEXPREC* const, dplyr::hybrid::hybrid_function> const&)
boost::unordered::unordered_map<SEXPREC*, dplyr::hybrid::hybrid_function, boost::hash<SEXPREC*>, std::equal_to<SEXPREC*>, std::allocator<std::pair<SEXPREC* const, dplyr::hybrid::hybrid_function> > >::insert(std::pair<SEXPREC* const, dplyr::hybrid::hybrid_function> const&)
dplyr::hybrid::hybrid_init(SEXPREC*, SEXPREC*, SEXPREC*, dplyr::hybrid::hybrid_id)
dplyr::hybrid::init()
init_hybrid_inline_map(_DllInfo*)
Unfortuantely, unless you're willing to wade through all of this I'm afraid you're not going to be able to use dplyr with Renjin. If I look at the test page none of the tests have ever passed with Renjin.
from renjin.
ESRSAN2
commented on August 16, 2024
Without dplyr and tidyr library (only with data.table, lubridate and sqldf), I get this exception now:
org.renjin.eval.EvalException: missing value where TRUE/FALSE needed
at org.renjin.sexp.SpecialFunction.asLogicalNoNA(SpecialFunction.java:71) ~[renjin-core-3.5-beta76.jar:na]
at org.renjin.primitives.special.IfFunction.apply(IfFunction.java:39) ~[renjin-core-3.5-beta76.jar:na]
at org.renjin.sexp.FunctionCall.eval(FunctionCall.java:80) ~[renjin-core-3.5-beta76.jar:na]
at org.renjin.primitives.special.BeginFunction.apply(BeginFunction.java:39) ~[renjin-core-3.5-beta76.jar:na]
at org.renjin.sexp.FunctionCall.eval(FunctionCall.java:80) ~[renjin-core-3.5-beta76.jar:na]
at org.renjin.sexp.Closure.applyPromised(Closure.java:200) ~[renjin-core-3.5-beta76.jar:na]
at org.renjin.sexp.Closure.apply(Closure.java:133) ~[renjin-core-3.5-beta76.jar:na]
at org.renjin.sexp.FunctionCall.eval(FunctionCall.java:80) ~[renjin-core-3.5-beta76.jar:na]
at org.renjin.primitives.special.AssignLeftFunction.assignLeft(AssignLeftFunction.java:58) ~[renjin-core-3.5-beta76.jar:na]
at org.renjin.primitives.special.AssignLeftFunction.apply(AssignLeftFunction.java:42) ~[renjin-core-3.5-beta76.jar:na]
at org.renjin.sexp.FunctionCall.eval(FunctionCall.java:80) ~[renjin-core-3.5-beta76.jar:na]
at org.renjin.sexp.ExpressionVector.eval(ExpressionVector.java:85) ~[renjin-core-3.5-beta76.jar:na]
at org.renjin.eval.Context.evaluate(Context.java:280) ~[renjin-core-3.5-beta76.jar:na]
at org.renjin.script.RenjinScriptEngine.eval(RenjinScriptEngine.java:174) ~[renjin-script-engine-3.5-beta76.jar:na]
at org.renjin.script.RenjinScriptEngine.eval(RenjinScriptEngine.java:169) ~[renjin-script-engine-3.5-beta76.jar:na]
at org.renjin.script.RenjinScriptEngine.eval(RenjinScriptEngine.java:148) ~[renjin-script-engine-3.5-beta76.jar:na]
at com.atradius.Rjavaintegrationdemo.service.RJavaService.getResult(RJavaService.java:17) ~[classes/:na]
at com.atradius.Rjavaintegrationdemo.controller.RJavaController.getResult(RJavaController.java:20) ~[classes/:na]
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:na]
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77) ~[na:na]
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:na]
at java.base/java.lang.reflect.Method.invoke(Method.java:568) ~[na:na]
at org.springframework.web.method.support.InvocableHandlerMethod.doInvoke(InvocableHandlerMethod.java:254) ~[spring-web-6.1.1.jar:6.1.1]
at org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHandlerMethod.java:182) ~[spring-web-6.1.1.jar:6.1.1]
at org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeAndHandle(ServletInvocableHandlerMethod.java:118) ~[spring-webmvc-6.1.1.jar:6.1.1]
at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHandlerMethod(RequestMappingHandlerAdapter.java:917) ~[spring-webmvc-6.1.1.jar:6.1.1]
at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleInternal(RequestMappingHandlerAdapter.java:829) ~[spring-webmvc-6.1.1.jar:6.1.1]
at org.springframework.web.servlet.mvc.method.AbstractHandlerMethodAdapter.handle(AbstractHandlerMethodAdapter.java:87) ~[spring-webmvc-6.1.1.jar:6.1.1]
at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:1089) ~[spring-webmvc-6.1.1.jar:6.1.1]
at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:979) ~[spring-webmvc-6.1.1.jar:6.1.1]
at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:1014) ~[spring-webmvc-6.1.1.jar:6.1.1]
at org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:903) ~[spring-webmvc-6.1.1.jar:6.1.1]
at jakarta.servlet.http.HttpServlet.service(HttpServlet.java:564) ~[tomcat-embed-core-10.1.16.jar:6.0]
at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:885) ~[spring-webmvc-6.1.1.jar:6.1.1]
at jakarta.servlet.http.HttpServlet.service(HttpServlet.java:658) ~[tomcat-embed-core-10.1.16.jar:6.0]
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:205) ~[tomcat-embed-core-10.1.16.jar:10.1.16]
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:149) ~[tomcat-embed-core-10.1.16.jar:10.1.16]
at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:51) ~[tomcat-embed-websocket-10.1.16.jar:10.1.16]
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:174) ~[tomcat-embed-core-10.1.16.jar:10.1.16]
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:149) ~[tomcat-embed-core-10.1.16.jar:10.1.16]
at org.springframework.web.filter.RequestContextFilter.doFilterInternal(RequestContextFilter.java:100) ~[spring-web-6.1.1.jar:6.1.1]
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:116) ~[spring-web-6.1.1.jar:6.1.1]
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:174) ~[tomcat-embed-core-10.1.16.jar:10.1.16]
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:149) ~[tomcat-embed-core-10.1.16.jar:10.1.16]
at org.springframework.web.filter.FormContentFilter.doFilterInternal(FormContentFilter.java:93) ~[spring-web-6.1.1.jar:6.1.1]
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:116) ~[spring-web-6.1.1.jar:6.1.1]
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:174) ~[tomcat-embed-core-10.1.16.jar:10.1.16]
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:149) ~[tomcat-embed-core-10.1.16.jar:10.1.16]
at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:201) ~[spring-web-6.1.1.jar:6.1.1]
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:116) ~[spring-web-6.1.1.jar:6.1.1]
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:174) ~[tomcat-embed-core-10.1.16.jar:10.1.16]
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:149) ~[tomcat-embed-core-10.1.16.jar:10.1.16]
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:167) ~[tomcat-embed-core-10.1.16.jar:10.1.16]
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:90) ~[tomcat-embed-core-10.1.16.jar:10.1.16]
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:482) ~[tomcat-embed-core-10.1.16.jar:10.1.16]
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:115) ~[tomcat-embed-core-10.1.16.jar:10.1.16]
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:93) ~[tomcat-embed-core-10.1.16.jar:10.1.16]
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:74) ~[tomcat-embed-core-10.1.16.jar:10.1.16]
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:340) ~[tomcat-embed-core-10.1.16.jar:10.1.16]
at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:391) ~[tomcat-embed-core-10.1.16.jar:10.1.16]
at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:63) ~[tomcat-embed-core-10.1.16.jar:10.1.16]
at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:896) ~[tomcat-embed-core-10.1.16.jar:10.1.16]
at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1744) ~[tomcat-embed-core-10.1.16.jar:10.1.16]
at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:52) ~[tomcat-embed-core-10.1.16.jar:10.1.16]
at org.apache.tomcat.util.threads.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1191) ~[tomcat-embed-core-10.1.16.jar:10.1.16]
at org.apache.tomcat.util.threads.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:659) ~[tomcat-embed-core-10.1.16.jar:10.1.16]
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61) ~[tomcat-embed-core-10.1.16.jar:10.1.16]
at java.base/java.lang.Thread.run(Thread.java:833) ~[na:na]
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Related Issues (20)
- Upgrade to Java 11 HOT 2
- RowNamesVector construction HOT 2
- getwd() begins with / on windows which differs from GNU R
- Recursive validObject does not work on formulas HOT 1
- Change BLAS dependency
- http://javadoc.renjin.org/ says access denied
- Avoid writing double semicolon in SVG style attribute HOT 1
- dplyr seem to stop execution HOT 4
- read.delim() returns integer instead of character
- Diacritics not removed using iconv
- Trouble clearing bindings with RenjinBindings.clear()
- What's the performance of the outputted Java compared to native speed? HOT 1
- Linking with Renjin in non-GPL software HOT 2
- Make GCC build script reentrant
- Build native application using GraalVM HOT 12
- ConcurrentModificationException while clear bindings
- Unable to load Randomforest model HOT 7
- Cannot extract contents of Renjin 3.5 beta76 archive
- Unable to retrieve REddyProc.jar
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