list-of-software

This repo is simply a list of all of the software we curenntly use and/or would LIKE to use...

Currently in use:

To convert DICOMs to nifti format:

https://github.com/rordenlab/dcm2niix

To trace lesions:

Analysis is done in python or matlab/octave through the use of jupyter notebooks, instantiated through dockers based on:

https://github.com/jupyter/docker-stacks/tree/master/datascience-notebook

To perform statistical analyses using our notebooks:

Would like to incorporate:

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