bcbio Goto Github PK
Name: Blue Collar Bioinformatics
Type: Organization
Bio: Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
Name: Blue Collar Bioinformatics
Type: Organization
Bio: Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
Repository to hold wrapper apps for bcbio CWL on DNAnexus
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines
Helper scripts for bcbio-nextgen
Compare validation outputs from bcbio against existing truth sets
Blue Collar Bioinformatics website
Parallel merging, squaring off and ensemble calling for genomic variants
Automated Docker builds for bcbio
example of bcbio RNAseq output to test bcbioRnaseq R package
Example of small RNAseq analysis with bcbio
A community menagarie of automated variant validations using bcbio and the Common Workflow Language
Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses
R package with well defined templates for most common pipelines
repository to host small dataset for bcbioR package
Conda recipes for the bioconda channel.
CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
Detect HIV Drug Resitant Mutations using amplicon sequencing data
Preparation scripts and bcbio integration for the ICR142 NGS validation series
Test workflows, run scripts and data for bcbio Common Workflow Language integration
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