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MMBERT

MMBERT: Multimodal BERT Pretraining for Improved Medical VQA

Yash Khare*, Viraj Bagal*, Minesh Mathew, Adithi Devi, U Deva Priyakumar, CV Jawahar

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Abstract: Images in the medical domain are fundamentally different from the general domain images. Consequently, it is infeasible to directly employ general domain Visual Question Answering ( VQA ) models for the medical domain. Additionally,medical images annotation is a costly and time-consuming process. To overcome these limitations, we propose a solution inspired by self-supervised pretraining of Transformer-style architectures for NLP , V ision and L anguage tasks. Our method involves learning richer medical image and text semantic representations using Masked Language Modeling (MLM) with image features as the pretext task on a large medical image+caption dataset. The proposed solution achieves new state-of-the-art performance on two VQA datasets for radiology images – VQA - M ed 2019 and VQA - RAD , outperforming even the ensemble models of previous best solutions. Moreover, our solution provides attention maps which help in model interpretability.

Train on VQARAD

python train_vqarad.py --run_name give_name --mixed_precision --use_pretrained --lr set_lr  --epochs set_epochs

Train on VQA-Med 2019

python train.py --run_name  give_name --mixed_precision --lr set_lr --category cat_name --batch_size 16 --num_vis set_visual_feats --hidden_size hidden_dim_size

Evaluate

python eval.py --run_name give_name --mixed_precision --category cat_name --hidden_size hidden_dim_size --use_pretrained

VQARAD Results

MMBERT General, which is a single model for both the question types in the dataset, outperforms the existing approaches including the ones which have a dedicated model for each question type.

Method Dedicated Models Open Acc. Closed Acc. Overall Acc.
MEVF + SAN - 40.7 74.1 60.8
MEVF + BAN - 43.9 75.1 62.7
Conditional Reasoning ✔️ 60.0 79.3 71.6
MMBERT General 63.1 77.9 72.0

VQA-Med 2019 Results

Our MMBERT Exclusive achieves state-of-the-art results on the overall accuracy and BLEU score, even surpassing CGMVQA E ns. which is an ensemble of 3 dedicated models for each category. Even our MMBERT General performs better than the CGMVQA Ens. on the abnormality and yes/no categories. Additionally, our MMBERT General outperforms single dedicated CGMVQA models in all the categories but modality.

Method Dedicated Models Modality Acc. Modality Bleu Plane Acc. Plane Bleu Organ Acc. Organ Bleu Abnormality Acc. Abnormality Bleu Yes/No Acc. Yes/No Bleu Overall Acc. Overall Bleu
VGG16 + BERT - - - - - - - - - - - 62.4 64.4
CGMVQA ✔️ 80.5 85.6 80.8 81.3 72.8 76.9 1.7 1.7 75.0 75.0 62.4 64.4
CGMVQA Ens. ✔️ 81.9 88.0 86.4 86.4 78.4 79.7 4.4 7.6 78.1 78.1 64.0 65.9
MMBERT General 77.7 81.8 82.4 82.9 73.6 76.6 5.2 6.7 85.9 85.9 62.4 64.2
MMBERT NP ✔️ 80.6 85.6 81.6 82.1 71.2 74.4 4.3 5.7 78.1 78.1 60.2 62.7
MMBERT Exclusive ✔️ 83.3 86.2 86.4 86.4 76.8 80.7 14.0 16.0 87.5 87.5 67.2 69.0

mmbert's People

Contributors

baeseongsu avatar unnjena avatar virajbagal avatar

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