baderlab Goto Github PK
Name: Bader Lab, University of Toronto
Type: Organization
Location: Toronto, Canada
Blog: http://www.baderlab.org
Bader Lab, University of Toronto's Projects
genemania-bulkloader
genemania_build
all scripts and code required to build Genemania database
genomeclinic-pgx
Web application for clinical pharmacogenomic interpretation
goslimmerapp
Gene Ontology Slimmer Cyotscape App
gproxy
A proxy server for Google Analytics to bypass adblockers etc
healthyratlivermap
humanliver
R Data: Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations
hypermodulesapp
magic
Genomics browser for the Medulloblastoma Advanced Genomics International Consortium (MAGIC) project
mcode
Cytoscape app that clusters a given network based on topology to find densely connected regions
mcode_docs
End-User Documentation for the MCODE Cytoscape App
modmashup.jl
Implementation of modified mashup algorithm in Julia Language.
mousecortex
R data: Developmental emergence of adult neural stem cells as revealed by single cell transcriptional profiling
netdx
R package with netDx software and data for examples
netdx-manual
User manual for netDx
netdx-website
Content for netdx.org
netdx.examples
Companion data package for netDx
networkslideshow
An app allowing for edges in a Cytoscape.js network to appear, disappear, and change with different frames.
openpip
The open protein interaction platform repo
pawson-pub-graphs
A Cytoscape.js visualisation of the publication network of Tony Pawson
pharmacogenomics
Pharmacogenomics app for MedSavant
pnc_pathwayanalysis
Pathway analysis pipeline for PNC data (GWAS + GSEA)
poppathr
Population-based pathway analysis of SNP-SNP coevolution
powclui
POW! PDZ domain-peptide interaction prediction command line user interface
promoterpredictor
Using a SVM and 5 identified features, scan genomic coordinates for putative promoter regions
rcy3introworkshop
Introductory workshop for cytoscape automation with RCy3
retinasc
saber
Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work in progress. Many things are broken, and the codebase is not stable.
saber-api-docs
API documentation for Saber
scclustviz
Explore and share your scRNAseq clustering results
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