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Utility scripts related to IKAROS manuscript
A short run-down of dcHiC (my research project)
ATAC-seq processing pipeline
AveSim is a pipeline to simulate Hi-C matrices involving CNVs and translocations.
Winter 2023 BGGN-213 class website
Analysis and data from report titled 'Brd2 is dispensable for genome compartmentalization and replication timing'
ChIP-seq analysis pipeline
Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps
Read and QC totalseq A fastq files and export count ADT matrix, merge with sc RNASeq data and export to scanpy
Co-localization analysis between reference GWAS and eQTL summary statistics
Format Converters: bam2bigwig, FitHiC2bigInteract/longRange, HiCPro2JuiceBox, bedGrapgh2bigwig; GTF/BAM deduplicates; dropbox link converter
A cool place to store your Hi-C
dcHiC: Differential compartment analysis for Hi-C datasets
Visualization for dcHiC files.
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
Clone of the Bioconductor repository for the DropletUtils package.
EAST: Efficient and Accurate Detection of Topologically Associating Domains from Contact Maps
ExTraMapper is a tool to find Exon and Transcript-level Mappings of a given pair of orthologous genes between two organisms using sequence conservation.
Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture assays such as Hi-C.
Statistically Significant loops from HiChIP data
Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data
Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk repository
A grammar of graphics for comparative genomics
Graphical 5hmC Convolutional Networks
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.