No /home/chencong/.ncbirc file, please fix it before using the program about metage2metabo HOT 5 CLOSED

Can you show the content of this file please?

https://metage2metabo.readthedocs.io/en/latest/install.html#requirements-and-installation

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(base) chencong@chencong-QiTianM428-A606:~$ ls -l ./.ncbirc
total 0

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Hi @cfrioux,
I fixed this error. However, this problem always arises.
(base) chencong@chencong-QiTianM428-A606:~$ m2m recon -g /home/chencong/pitmud -o /home/chencong/output5 -c 1
######### Running metabolic network reconstruction with Pathway Tools #########
---------- Launching mpwt ----------
Check and delete unfinished builds of Pathway Tools.
Traceback (most recent call last):
File "/home/chencong/anaconda3/bin/m2m", line 8, in
sys.exit(main())
File "/home/chencong/anaconda3/lib/python3.9/site-packages/metage2metabo/main.py", line 371, in main
main_recon(args.genomes, args.out, args.noorphan, args.padmet, args.level, args.cpu,
File "/home/chencong/anaconda3/lib/python3.9/site-packages/metage2metabo/main.py", line 401, in main_recon
pgdbdir, sbmldir, padmet_folder= recon(*allargs)
File "/home/chencong/anaconda3/lib/python3.9/site-packages/metage2metabo/m2m/reconstruction.py", line 62, in recon
pgdb_dir = genomes_to_pgdb(inp_dir, out_dir, nb_cpu,
File "/home/chencong/anaconda3/lib/python3.9/site-packages/metage2metabo/m2m/reconstruction.py", line 159, in genomes_to_pgdb
multiprocess_pwt(genomes_dir, pgdb_dir,
File "/home/chencong/anaconda3/lib/python3.9/site-packages/mpwt/mpwt_workflow.py", line 158, in multiprocess_pwt
independent_mpwt(input_folder, output_folder, patho_inference,
File "/home/chencong/anaconda3/lib/python3.9/site-packages/mpwt/mpwt_workflow.py", line 357, in independent_mpwt
run_patho_flat_ids, run_flat_ids = check_input_and_existing_pgdb(run_ids, input_folder, output_folder, number_cpu_to_use)
File "/home/chencong/anaconda3/lib/python3.9/site-packages/mpwt/pathologic_input.py", line 169, in check_input_and_existing_pgdb
pathologic_string = pathologic_log.read()
File "/home/chencong/anaconda3/lib/python3.9/codecs.py", line 322, in decode
(result, consumed) = self._buffer_decode(data, self.errors, final)
UnicodeDecodeError: 'utf-8' codec can't decode byte 0xb7 in position 186820: invalid start byte

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Hi @cfrioux, @ArnaudBelcour,
When I was creating pictures, I ran into this problem. Can you tell what caused this error?
(base) chencong@chencong-QiTianM428-A606:~$ m2m_analysis graph -j /hone/chencong/output11/json -t /home/chencong/targets_toy.sbml -o /home/chencong/output12
Traceback (most recent call last):
File "/home/chencong/anaconda3/bin/m2m_analysis", line 8, in
sys.exit(main())
File "/home/chencong/anaconda3/lib/python3.9/site-packages/metage2metabo/main_analysis.py", line 302, in main
main_graph(args.json, args.targets, args.out, args.taxon, args.level)
File "/home/chencong/anaconda3/lib/python3.9/site-packages/metage2metabo/main_analysis.py", line 324, in main_graph
graph_analysis(*allargs)
File "/home/chencong/anaconda3/lib/python3.9/site-packages/metage2metabo/m2m_analysis/solution_graph.py", line 58, in graph_analysis
create_gml(json_paths, target_paths, output_dir, taxonomy_output_file)
File "/home/chencong/anaconda3/lib/python3.9/site-packages/metage2metabo/m2m_analysis/solution_graph.py", line 109, in create_gml
with open(json_paths[target_category]) as json_data:
KeyError: 'targets_toy'

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I fixed it while entering. I would like to ask how this file(--oog Oog.jar) was generated, since I didn't find it in the directory I got.

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