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ASHalving

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solve Guided Genome Halving Problem (GGHP), Genome Aliquoting Problem m=3 (GAP3)

cli options:

     -g,--genome <arg>   Path to source (main) genome
     -b,--ord <arg>      Path to ordinary genome B (for GGHP only)
     -o,--output <arg>   Resulted path
     -r,--restricted     Flag for using restricted model, default = false
     -t,--time <arg>     Time limit for solving problem (in seconds), default 60*60*2
     -w,--dir <arg>      Solve all problems from dir (use instead g, [b], o) (for GGHP only)

example:

java11 -classpath target/classes:lib/* Run -g data/yeasts_tannier/36/wgd.gen -b data/yeasts_tannier/36/ord.gen -o resultedPath

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