Some helper programs for NASA GeneLab, such as GL-download-GLDS-data
for downloading files from a specific OSD or GLDS ID, and GL-get-workflow
for downloading workflows used by GeneLab for processing datasets.
The genelab-utils package should be installed with conda/mamba. If you are not familiar with conda, you can find an introduction here if wanted, and if you are not familiar with mamba, there is a super-short introduction on that same page here if wanted βΒ it's definitely worth using mamba if you use conda at all π
conda install -c conda-forge -n base mamba
mamba create -n genelab-utils -c conda-forge -c bioconda -c defaults -c astrobiomike genelab-utils
conda activate genelab-utils
All programs are prefixed with GL-
and have a help menu accessible with -h
. Version info can be accessed with GL-version
.
- Programmatically downloading GLDS data
- Downloading GeneLab workflows