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arch-utils's Introduction

SCILHS-utils

Various scripts and tools used to manage network sites.

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arch-utils's Issues

Totalnum: c_operator issue in pcornet_enc table

This issue affects the execution of totalnum script on pcornet_enc metadata table. We encountered this in PostgreSQL.

Value in c_operator in one of the rows is incompatible with the c_dimcode. For c_dimcode '\PCORI\ENCOUNTER\VERSION', the current c_operator is 'IN'. This creates the following erroneous sql during totalnum execution:

select count(distinct(patient_num)) from i2b2demodata.visit_dimension where patient_num in (select patient_num from i2b2demodata.visit_dimension where location_zip in (\PCORI\ENCOUNTER\VERSION));
ERROR: syntax error at or near ""
LINE 1: ...b2demodata.visit_dimension where location_zip in (\PCORI\ENC...

To correct this issue, c_operator should be 'LIKE' in the metadata table.

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