andymlau / deuteros_2.0 Goto Github PK

I do not know if this is specific to the Mac or not. When I attempt the Tutorials using XylE_cluster_example.csv the Matlab console (where I run "run_Deuteros.sh ~/Applications/MATLAB/MATLAB_Runtime/R2022b/"), after some insignificant MATLAB font warnings, I see:

Assigned /Users/mp/facil/deuteros/example_data/example_inputs/ as last accessed folder
Error using readtable
Unable to read the entire file. You may need to specify a different format, delimiter, or number of header lines.

Note: readtable detected the following parameters:
'Delimiter', ',', 'HeaderLines', 0, 'ReadVariableNames', false

Error in main_20221008/ClusterBrowseButtonPushed (line 4756)

Error in appdesigner.internal.service.AppManagementService/executeCallback (line 171)

Error in matlab.apps.AppBase>@(source,event)executeCallback(ams,app,callback,requiresEventData,event) (line 62)

Error using matlab.ui.control.internal.controller.ComponentController/executeUserCallback
Error while evaluating Button PrivateButtonPushedFcn.

When I attempt to load HDExaminer_example.csv, after a much fancier intro featuring a giant "Deuteos 2.0" banner, I see

Unrecognized field name "table".

Error in main_20221008/ImportButtonPushed (line 4871)

Error in appdesigner.internal.service.AppManagementService/executeCallback (line 171)

Error in matlab.apps.AppBase>@(source,event)executeCallback(ams,app,callback,requiresEventData,event) (line 62)

Error using matlab.ui.control.internal.controller.ComponentController/executeUserCallback
Error while evaluating Button PrivateButtonPushedFcn.

I am able to load back_exchange_example.csv and run Tutorial 5 correctly as far as I can tell.
For reference, here are the checksums for the three csv files:

$ cksum *.csv
2889633567 33853 HDExaminer_example.csv
1808850487 691506 XylE_cluster_example.csv
1177810686 157075 back_exchange_example.csv

After the installation we have this massage ¨Your installation may require additional configuration steps.

Append the following to your DYLD_LIBRARY_PATH environment variable:

/Applications/MATLAB/MATLAB_Runtime/R2022b/runtime/maci64:/Applications/MATLAB/MATLAB_Runtime/R2022b/bin/maci64:/Applications/MATLAB/MATLAB_Runtime/R2022b/sys/osmaci64:/Applications/MATLAB/MATLAB_Runtime/R2022b/extern/bin/maci64

If MATLAB Runtime is to be used with MATLAB Production Server, you do not need to modify the above environment variable.In the following directions, replace MR/R2022b by the directory on the target machine where MATLAB is installed, or MR by the directory where the MATLAB Runtime is installed.

If the environment variable DYLD_LIBRARY_PATH is undefined, set it to the following string:

MR/R2022b/runtime/maci64:MR/R2022b/sys/os/maci64:MR/R2022b/bin/maci64

If it is defined, set it to the following:

${DYLD_LIBRARY_PATH}:MR/R2022b/runtime/maci64:MR/R2022b/sys/os/maci64:MR/R2022b/bin/maci64¨
after resolving this with ¨
(base) ritwikmaity@Ritwiks-MacBook-Air ~ % echo $DYLD_LIBRARY_PATH

(base) ritwikmaity@Ritwiks-MacBook-Air ~ % export DYLD_LIBRARY_PATH=MR/R2022b/runtime/maci64:MR/R2022b/sys/os/maci64:MR/R2022b/bin/maci64

(base) ritwikmaity@Ritwiks-MacBook-Air ~ % echo $DYLD_LIBRARY_PATH
MR/R2022b/runtime/maci64:MR/R2022b/sys/os/maci64:MR/R2022b/bin/maci64
(base) ritwikmaity@Ritwiks-MacBook-Air ~ % ¨
The programme wont run and reports ¨Cannot locate a valid install area¨