java -jar target/biojavatranslate-jar-with-dependencies.jar test-dna.fa
Example Java Code for Translating a DNA Sequence into Proteins
import org.biojava.nbio.core.sequence.DNASequence;
import org.biojava.nbio.core.sequence.ProteinSequence;
import org.biojava.nbio.core.sequence.RNASequence;
import org.biojava.nbio.core.sequence.transcription.TranscriptionEngine;
public class App {
public static void main(String[] args) throws Exception {
TranscriptionEngine transcriber = TranscriptionEngine.getDefault();
DNASequence d = new DNASequence("atgtcaatggtaagaaatgtatcaatcagagcgaaaaattggaaattttgt");
RNASequence r = e.getValue().getRNASequence(transcriber);
ProteinSequence p = r.getProteinSequence(transcriber);
}
}