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gdp_pgs's Introduction

Creating a PGS for GDP using Arabidopsis data

This is an absurdist exercise to create a Polygenic score for Gross Domestic Product. Basically what I lay out here is a GWAS using publicly available Arabdiopsis thaliana genome data and country-of-origin GDP as my phenotype

Install

If you want to run this on your own machine, I'd recommend setting up a new environment in using conda and then using the provided requirements.

The simplest way you could do this if you already have conda installed would be

conda create --name gdp --file requirements/conda.txt

that should set up the conda environment for you to run the notebook I've provided.

Acknowledgements

The idea for GWAS on GDP came from my troll-like muse, Matt Hahn

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