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norma

Convert XML/SVG/PDF into normalised, sectioned, scholarly HTML

normami

Merger of Norma and Ami

normami-1

A tool to convert a variety of inputs into normalized, tagged, XHTML (with embedded/linked SVG and PNG where appropriate).

nycflights13

An R data package containing all out-bound flights from NYC in 2013 + useful metdata

ontology-tutorial

Ontology Tutorial

open-discovery

Open roadmap for developing a visual interface to the world's scientific knowledge

opennotebook

Communal methods and links to sub-projects using OpenNotebookScience

opensciencecitizeninitiative

Project to set up, organize, and govern an EU Citizen Initiative about Open Science

openvirus

aggregation of scholarkly publications and extracted knowledge aon viruses and epidemics.

optogenetics

AMI tools for searching for optogenetic papers (HT James Sanders)

pangolin

Resources for a lineage naming scheme for SARS-CoV-2/hCoV-2019

pils

Programming In the Life Sciences

planemo

Command-line utilities to assist in developing tools for the Galaxy Project.

pubmedwikidata

Small project to get information about PubMed articles from Wikidata.

pychebi

"Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on ‘small’ chemical compounds."

quantumchem

searching Open Access literature for quantum chemistry (inspiration Leonie Mueck)

r4r

This Repository contains the complete course material for the First TIGR2ESS FP2/FP3 Workshop on R for Genomics and Data Mining.

read-the-classics-karen

Classic citations for single-cell RNA-seq oriented people. Famous datasets, R packages, python modules and so on.

rnaseq_september_2018

Introduction to RNAseq Data Analysis - September 2018

rrdf

R package for handling RDF data.

rsem

RSEM: accurate quantification of gene and isoform expression from RNA-Seq data

rwikipathways

R client package for the WikiPathways API.

sars-cov-2

Initial analysis of COVID-19 data using Galaxy, BioConda and public research infrastructures

sars-cov-2-gene-analysis

sars-cov-2-queries

sars-cov-3

SARS-CoV-2 (Severe acute respiratory syndrome coronavirus 2) sequences and features

serratus

Ultra-deep Coronavirus Homology Search

simulatedeboladataset

Repository contains simulated ebola RNASEQ reads genarated from ebola reference genome with manually called mutations.

sparql

collection of SPARQL queries for Wikidata, Uniprot and Wikipathways

sparql_to_pandas

Example for accessing SPARQL endpoints in Python with Pandas