ambarishk Goto Github PK

2018-11-29-crick-london

Version of Data Carpentry in R Course for CRUK FCI,London

2019-01-15-cruk-cambridge-dcinr

Data Carpentry in R course held at School of Clinical Medicine, Cambridge

2020-covid-19-bh

Coordinating the CWL workflow related to the 2020 COVID-19 BioHackathon

adam

ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.

ami

ami-jars

point releases of ami executables (normally as maven-appassembler jar-with-dependencies)

arcashla

Fast and accurate in silico inference of HLA genotypes from RNA-seq

archaeopteryx-js

Archaeopteryx.js is a software tool for the visualization and analysis of highly annotated phylogenetic trees.

arcsv

Complex structural variant detection from WGS data

bh20-seq-resource

Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis

bh20-workflows-bhxiv

Workflows topic group BioHackathon 2020 mini-publication for https://BioHackrXiv.org

bio-cipres

Phylogenomic analysis on the CIPRES REST portal

bio-cwl-tools

biocluster

Tutorial on building a computing cluster for bioinformatics

biohackathon-covid-19

biohackrxiv.github.io

biomarkers

Biomarker collection.

broad-prod-wgs-germline-snps-indels

Workflows used in production at Broad for germline short variant discovery in WGS data

cdkbook

Groovy Cheminformatics with the Chemistry Development Kit

cephis

Evolution of the `ches` repository to include all support libraries and PDFBox2

cevopen

Contentmining of Open phytochemical literature for medicinal activities

chemcuration2019

ChemCuration 2019

chemical

A word2vec model to find similar chemical compound names

chemidconvert

Chemical identifier conversion REST Api

chipseq_1day

climate

OpenAccess papers mined for Climate Change

cmforestplots

Things for managing the ContentMine forest plot functionality in normal

coding-lane-assets

common-workflow-language

Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊

converters

hml and haml converter repo