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jmath's Introduction

Hi all 👋

  • 🌱 I teach Computer Science at Tulane University.
  • 🔭 I'm interested in proteins, math, and dnd.
    • I have other interests too!
  • ⚡ Fun fact: I spent a summer compiling my own linux from scratch.
    • It took a whole summer because I had alot to learn in order to do it!

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jmath's Issues

Finding Clique on Graph with Single Node Crashes

When using IncMaxCliqueAdapter, trying to find a clique on a graph with a single node causes an IndexOutOfBoundsException to be thrown:

In the following error output, neighboringNodesGraph is the graph that is being passed into findMaxClique(). To fix, check the size of the graph at the beginning of findMaxClique(). Only run the algorithm if the size is >=2. By definition, the Max Clique of a graph of size one is that single node, and the Max Clique of a graph of size zero is an empty graph.

Size of neighboringNodesGraph: 1
Reading input from IncMaxCliqueProcess
Exception in thread "main" java.lang.ArrayIndexOutOfBoundsException: -3
at java.util.ArrayList.elementData(ArrayList.java:418)
at java.util.ArrayList.get(ArrayList.java:431)
at com.aaronpmaus.jMath.graph.IncMaxCliqueAdapter.findMaxClique(IncMaxCliqueAdapter.java:100)
at com.aaronpmaus.jMath.graph.IncMaxCliqueAdapter.findMaxClique(IncMaxCliqueAdapter.java:49)
at com.aaronpmaus.jProt.metrics.Metrics.getNeighborhood(Metrics.java:348)
at com.aaronpmaus.jProt.metrics.Metrics.getGlobalDistanceRegions(Metrics.java:295)
at com.aaronpmaus.jProt.executables.JProtMetrics.globalDistanceTest(JProtMetrics.java:280)
at com.aaronpmaus.jProt.executables.JProtMetrics.main(JProtMetrics.java:199)

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