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nu-ngs01's Introduction

Nile University

NGS Data analysis course-1

Bioinformatics Diploma @ NU

Lectures

Day 1
  1. Part 1 | Next generation sequencing Techniques [Canvas]
  2. Part 2 | Data file formats for NGS "intro" [Canvas]
  3. Part 3 | BASH [Lectures]
Day 2
  1. Part 1 | Fastq exploration and seqkit_examples
  2. Part 2 | FASTQC
  3. Part 3 | Error trimming
Day 3
  1. Part 1 | Sequence Alignment [Canvas]
  2. Part 2 | Tutorial of Sequence Alignment
  3. Part 3 | Git
Day 4
  1. Part 1 | Algorithms for de novo assembly [Canvas]
  2. Part 2 | Tutorial of de novo assembly
  3. Part 3 | Reference based assembly [Canvas]
  4. Part 4 | Tutorial of Reference based assembly
Day 5
  1. Part 1 | Assembly Quality Assessment
  2. Part 2 | functional annotation of Transcriptome assemply
  3. Part 3 | Compare Transcriptome assemplies
Day 6
  1. Part 1 | Differential expression
  2. Part 2 | Assignment

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