Internal Bioconductor package used to create binaries for docker images produced by Bioconductor. The package installation and binary creation is parallelized on a Kubernetes cluster launched (at the moment) on a Kubernetes cluster using GKE.
The package works in sync with the Bioconductor/k8sredis
kubernetes
application.
Nitesh Turaga - [email protected]
Martin Morgan
k8sredis: www.github.com/Bioconductor/k8sredis
Vignette: BiocKubeInstall_Tutorial
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inst/helm-chart : helm chart for k8s app
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inst/docker : docker images used inside the k8s application
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BiocKubeInstall R/ : Code which runs on the manager and worker replica sets.
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Github Actions: Start cluster and deploy to cluster, delete cluster, and test binary package installs 3 times a week.
BiocManager::install('Bioconductor/AnVIL')
## Should show the Google storage api as the top result
AnVIL::repositories()
AnVIL::install('Rhtslib')