Alistair Miles's Projects
Examples and utilities for calling copy number variations (CNVs) from high throughput sequence data using a hidden Markov model (HMM)
Take turns playing "I Spy" game with the computer
Intake is a lightweight package for finding, investigating, loading and disseminating data.
Create beautiful, publication-quality books and documents from computational content.
Draft landing page for the malaria vector genome observatory.
lookseq
Repository with installation scripts and environment definitions for conda and texlive, for standardising environments across the MalariaGEN resource centre team.
A Python package providing convenience functions for accessing MalariaGEN public data.
Repo for files and issues related to cloud deployment of JupyterHub.
Intake data catalogs for MalariaGEN.
Pipelines for processing malaria parasite and mosquito genome sequence data.
A bibtex bibliography for all things related to malaria vector biology and genomics.
Trying out manubot...
Planning and Collaborative Space for Executable Book Project
A conda-smithy repository for monotonic.
Jupyter Notebook Conversion
📦 Ready to use Docker images maintained by the Nebari team
A Python package providing buffer compression and transformation codecs for use in data storage and communication applications.
A conda-smithy repository for numcodecs.
Build numpy-style docstrings programmatically and apply them using a decorator.
Bayesian haplotype-based mutation calling
Eyes on your (genomic) data
A conda-smithy repository for petl.
Fast, flexible and easy to use probabilistic modelling in Python.
The wild ancestor of pomegranate.
A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM or BAM file.
A conda-smithy repository for pytables.
This repository is for general learning purposes. Aim is to learn conventional way to write a python code.
A Variant Call Format reader for Python.