Need fix SMTP socket error in production.

Add macrophage resource for storing experimental data.

The current tagging gem mongoid_taggble seems to be a dead project and there does not seem to be a method for clearing out old tags. Another solution seems to be mongoid-tags-arent-hard

Simplify Macrophage constants and re-use helper method from the ApplicationController to generate drop-down selection options.

Add the ability to search all stored records for terms that utilize basic boolean search terms such as:

AND
OR
NOT

Example

AND AND NOT

We need to add code that enables the programmer to find all resources associated with any group that a user belongs to.

Add authorization logic and update ability.rb file for restricting access to Macrophage data that is only allowable by group access.

For the index action of the Macrophage resource, we should add the ability to paginate the listing.

Since we do not have the MSU MLST system up and running yet, we will put a set of GBS strain values into the model class for Macrophages. We will then add a view helper to create a drop down list of the Macrophage form.

Add a search tab that allows searching experimental results by:

• bacteria
• user
• date submitted/created

Update new user email message to match new service.

We currently use a defined instance variable for setting the class="active". We can factor this usage out into an application helper that might look like:

def active(path)
request.fullpath == path ? "active" : ""
end

We would then call this helper in the view layouts had menu items that we need to highlight.

Pagination call on user results needs to be fixed to return the correct list of users.

Add support for Travis Continuous Integration support into the code. This implies setting up .travis.yml file for configuring the build.

Need to include flash section on devise layout. This will allow users to be notified when email and other actions are being taken by the Devise authentication system.

Simplify the Macrophage constants and helper methods. Move the option constants from an array of hashes to simple hash structures.

The groups controller is not properly removing group members. We will just remove this feature for this project, since they will not be using the group and project features.

Setup Devise to timeout the login session after 30 minutes.

Need to add a dashboard panel to show the latest 5 results with pagination.

In the production environment force the entire application to use SSL.

Initial immune response result data elements have been received from the lab. We can build the initial results resource for Immune response experiments.

Need to paginate User.all results in the User#index action.

Create view partials and helpers to show a list of available projects for the currently signed in user.

In order to add searching across record types, create a free form tag field that is index and searchable.

Came across an error on my part. I need you to change strain GB1459 to 1454 in the repository, if possible. I just found out that I had it labeled in error.