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Segmentation and Classification models for COVID CT scans (COVID, pneumonia, normal) based on Mask R-CNN.

Home Page: https://github.com/AlexTS1980/COVID-CT-Mask-Net

Python 100.00%
ct-scans covid segmentation-model classification-model covid-19 mask-rcnn computer-tomograpy computer-vision deep-learning mask chest

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covid-ct-mask-net's Issues

overlap mask

is the VOC style mask work with overlapped instance ground truth? (lungs and lesion)

Problems about "inference_segmentation.py"

Question 1: I would like to try to run the reference_segmentation.py file, but the following error occurs "RuntimeError: Can't call numpy() on Tensor that requires grad. use tensor.detach(). numpy() instead.". As shown in the image below.
Uploading WechatIMG599.jpg…

Then I modified ax.add_patch(rect) to ax.add_patch(rect.detach().numpy()). But new error "AttributeError: 'Rectangle' object has no attribute 'detach'" appears.
Uploading WechatIMG600.jpg…

I would like to ask how to solve this problem. The image format I am using is png.

Question 2: While segmenting the CT images, I found that there is a corresponding tasks file in both test and train datasets. How is that masks file obtained?

Segmentation weights available?

Hello, I would like to reproduce the segmentation capabilities of your work, do you have available weights to run your prediction exactly with the result of your training you published? Thanks

Do you have code how to convert DICOM to PNG?

Hi, thanks a lot for your nice work. I followed your instruction and repeated your great results.
However, with my DICOM files, I tried a few conversions but none of them worked. The result is very poor. Do you have an idea of how to read the DICOM file to have a meaningful result?

Inquiry for CT Segmentation Dataset

I want to inquire about the dataset usage mentioned in your GitHub statement. In your statement, you mentioned, "We trained it on the CNCB CT images with masks ((http://ncov-ai.big.ac.cn/download, Experiment data files): 500 training and 150 for testing taken from COVID-positive patients, but some slices have no lesions."

1

I would like to know which specific dataset from the website was used for training. Is it from the COVID19-1.zip to COVID19-31.zip dataset? As shown in the figure below.

2

Thank you for your time and consideration.

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