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defectivator's Introduction

defectivator

defectivator is an API for generating defects in periodic crystalline materials. It is very much a work in progress, some general features include:

  • all symmetry dealt with in the primitive cell and then rescaled to the defect cell for speed
  • defects can be identified and the origin of the unit cell shifted such that they are centered for visulatisation purposes
  • defect complex generation
  • calculate sensible charge states for point defects using data-mined oxidation states
  • generating random defect structures

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defectivator's Issues

primitive to bulk mapping is pretty ineffcient.

We don't need any mapping if the DefectSet class can immediately work out the relationship between the defect cell and the primitive cell and then use that relationship to perform any further transformations. Removes a dependency also

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