Comments (5)
jaclyn-taroni
commented on July 28, 2024
2
✅ DOI: 10.5281/zenodo.7805408
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jaclyn-taroni
commented on July 28, 2024
1
Before I go ahead and upload to Zenodo, @sjspielman will do a final quality check first thing tomorrow. @sjspielman, you can find openpbta-manuscript-figure-data.zip in the shared CCDL drive in the OpenPBTA folder.
I created it with the following command from the tables/zenodo-upload directory:
zip -r openpbta-manuscript-figure-data.zip . -x '.*'
This should prevent the .DS_Store files and .gitignore from being included. (I thought including .gitignore in the Zenodo upload would be more confusing than helpful).
Please confirm that you are able to unzip properly and that there are no hidden files. I checked locally with zipinfo but might as well double-check while you're at it!
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sjspielman
commented on July 28, 2024
Noting that a zip compression of zenodo-upload/ is ~898 MB.
The....vast majority of that is from the PBTA VAF file which itself is ~893 MB!
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sjspielman
commented on July 28, 2024
Please confirm that you are able to unzip properly and that there are no hidden files.
Confirmed! However, the README is not the most recent version, so that file needs to be replaced.
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jaclyn-taroni
commented on July 28, 2024
Thanks, @sjspielman. I've remedied that and used the same command to generate a new zip file. I am in the middle of the Zenodo upload right now!
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Related Issues (20)
- Complete README for Zenodo CSV files HOT 1
- Complete README for Zenodo CSV files HOT 2
- Complete README for Zenodo CSV files
- Zenodo CSVs: Update to include sample information HOT 2
- Complete molecular alterations CSV for Zenodo upload HOT 1
- Figure S7 re-compile
- Create `v1.0.0` release HOT 1
- Tag `v1.0.0` Docker image HOT 1
- Figure 1 Revisions for Publication
- Figure 2 Revisions for Publication HOT 1
- Figure 3 Revisions for Publication
- Figure 4 Revisions for Publication
- Figure 5 Revisions for Publication HOT 1
- Adhere to figure guidelines HOT 2
- Re-upload underlying figure data to Zenodo HOT 4
- Ensure Figure S7 broad histology legend exists and recompile figure
- Fix S7 zenodo file names
- Confirm that Zenodo CSVs match their figure panels HOT 1
- Archive this repository HOT 1
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